CloVR currently supports the following sequence analysis protocols with wide application in microbial genomics. Each protocol consists in a pre-installed software pipeline for automated and reproducible sequence data processing.
- CloVR-Search supports large-scale, on-demand BLAST searches taking advantage of scalable cloud compute resources.
- CloVR-Microbe supports automated whole-genome assembly, gene finding and functional annotation of 454 and Illumina sequence data.
- CloVR-16S supports automated 16S ribosomal RNA sequence analysis for microbial community composition studies.
- CloVR-Comparative supports comparative genomic studies taking advantage of the Sybil to allow for interactive exploration and visualization of microbial genomes.
Other Protocols:
-Â CloVR-Human Contaminant Screening
-Â CloVR-Metagenomics Assembly
-Â CloVR-Alignment using Bowtie