Protocols

CloVR currently supports the following sequence analysis protocols with wide application in microbial genomics. Each protocol consists in a pre-installed software pipeline for automated and reproducible sequence data processing.

• CloVR-Search supports large-scale, on-demand BLAST searches taking advantage of scalable cloud compute resources.

• CloVR-Microbe supports automated whole-genome assembly, gene finding and functional annotation of 454 and Illumina sequence data.

• CloVR-16S supports automated 16S ribosomal RNA sequence analysis for microbial community composition studies.

• CloVR-Metagenomics supports taxonomic and functional classifications of metagenomics shotgun sequence data.

 

Other Protocols:

– CloVR-Human Contaminant Screening
– CloVR-Metagenomics Assembly
– CloVR-Alignment using Bowtie